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anti 146 jag1 antibody  (Cell Signaling Technology Inc)


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    Structured Review

    Cell Signaling Technology Inc anti 146 jag1 antibody
    Anti 146 Jag1 Antibody, supplied by Cell Signaling Technology Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/jag1+antibody/pm40912393-98-7-10
    Average 86 stars, based on 1 article reviews
    anti 146 jag1 antibody - by Bioz Stars, 2026-09
    86/100 stars

    Images

    Related Articles

    Western Blot:

    Article Title: Long non-coding RNA Malat1 fine-tunes bone homeostasis and repair by orchestrating cellular crosstalk and β-catenin-OPG/Jagged1 pathway
    Article Snippet: Cell lysates were fractionated on 7.5% SDS-PAGE, transferred to Immobilon-P membranes (0.45 μm, Millipore), and incubated with specific antibodies. .. Western Lightning Plus-ECL (PerkinElmer) was used for detection. β-catenin antibody (9562, 1:1000) and Jag1 antibody (70109, 1:1000) were obtained from Cell Signaling Technology. .. Nfatc1 antibody (556602, 1:1000) was obtained from BD Biosciences; Blimp1 (sc-47732, 1:1000), c-Fos (sc-52, 1:1000), OPG/Osteoprotegerin (sc-390518, 1:1000) and p38α (sc-535, 1:3000) antibodies were purchased from Santa Cruz Biotechnology.

    Article Title: Malatl fine-tunes bone homeostasis by orchestrating cellular crosstalk and the β-catenin-OPG/Jagged1 pathway
    Article Snippet: Cell lysates were fractionated on 7.5% SDS- PAGE, transferred to Immobilon- P membranes (0.45 μm, Millipore), and incubated with specific antibodies. .. Western Lightning Plus- ECL (PerkinElmer) was used for detection. β-catenin antibody (9562, 1:1000) and Jag1 antibody (70109, 1:1000) were obtained from Cell Signaling Technology. .. Nfatc1 antibody (556602, 1:1000) was obtained from BD Biosciences; Blimp1 (sc- 47732, 1:1000), c- Fos (sc- 52, 1:1000), OPG/Osteoprotegerin (sc- 390518, 1:1000) and p38α (sc- 535, 1:3000) antibodies were purchased from Santa Cruz Biotechnology.

    Article Title: Long non-coding RNA Malat1 is essential for fine-tuning bone homeostasis through orchestrating cellular crosstalk and the β-catenin-OPG/Jagged1 pathway
    Article Snippet: Cell lysates were fractionated on 7.5% SDS-PAGE, transferred to Immobilon-P membranes (0.45 μm, Millipore), and incubated with specific antibodies. .. Western Lightning Plus-ECL (PerkinElmer) was used for detection. β-catenin antibody (9562, 1:1000) and Jag1 antibody (70109, 1:1000) were obtained from Cell Signaling Technology. .. Nfatc1 antibody (556602, 1:1000) was obtained from BD Biosciences; Blimp1 (sc- 14 47732, 1:1000), c-Fos (sc-52, 1:1000), OPG/Osteoprotegerin (sc-390518, 1:1000) and p38α (sc-535, 1:3000) antibodies were purchased from Santa Cruz Biotechnology.

    other:

    Article Title: The Notch1 intracellular domain orchestrates mechanotransduction of fluid shear stress
    Article Snippet: Antibodies against Notch1 V1754 (V1744 in mice, D3B8, 1:500 WB), Notch1 ICD (D1E11, 1:200 IF, 1:1000 WB), GAPDH (14C10, 1:5000 WB), Dll4 (D7N3H, 1:1000 WB), Jag1 (D4Y1R, 1:1000 WB), GFP (D5.1, 1:5000 WB), Annexin A2 (D11G2, 1:1000 WB, 1:200 IF), Presenilin-1 (E3L9X, 1:1000 WB), and Flotillin-2 (C42A3, 1:1000 WB) were from Cell Signaling Technologies.

    Article Title: miR-34a-5p modulation of polycystic ovary syndrome via targeting the NOTCH signaling pathway.
    Article Snippet: The subsequent principal antibodies were utilised in the analyses: JAG1 (CST, USA), NICD (CST, USA), Notch (ZEN-BIOSCIENCE, China), Bcl-2 (Elabscience, China), Bax (Elabscience, China), caspase-3 (Elabscience, China), caspase-9 (Elabscience, China), Hes1 (ZEN-BIOSCIENCE, China), and Hey1 (Affinity, China).

    Article Title: A Wnt10a-Notch signaling axis controls Hertwig’s epithelial root sheath cell behaviors during root furcation patterning
    Article Snippet: Following antigen retrieval (ZSGB-BIO, Beijing, China), sections were blocked for 1 h at room temperature in blocking solution (ZSGB-BIO), and incubated with primary antibodies against E-Cadherin (1:100; ab76319, Abcam, Cambridge, UK), Acetyl-α-Tubulin (1:100; Cell Signaling Technology (CST), Danvers, USA), Cyclin D1 (1:100; CST), Notch2 (1:50; CST), or Jag1 (1:50; CST), overnight at 4 °C.

    Staining:

    Article Title: Jagged1 intracellular domain/SMAD3 complex transcriptionally regulates TWIST1 to drive glioma invasion
    Article Snippet: .. The samples were stained with JAG1 antibody (1:200, Cat. #70109; Cell Signaling Technology) overnight at 4 °C, washed three times for 5 min each in ice-cold PBS, and incubated with Alexa 488 conjugated secondary antibody (1:400, Cat. #A32731, and #A28175; Invitrogen) or Alexa 594 conjugated secondary antibody (1:400, Cat. #A11012 and #11032; Invitrogen) at 25 °C for 2 h. After staining with DAPI (1:1,000, Cat. #D9542; Sigma-Aldrich) for 5 min, slides were mounted in mounting solution (Cat. #P36930; Invitrogen) and stored at 4 °C in the dark. .. Fluorescence was detected using a confocal laser-scanning microscope (LSM800; Carl Zeiss).

    Article Title: Jagged1 intracellular domain/SMAD3 complex transcriptionally regulates TWIST1 to drive glioma invasion.
    Article Snippet: .. The samples were stained with JAG1 antibody (1:200, Cat. #70109; Cell Signaling Technology) overnight at 4 °C, washed three times for 5 min each in ice-cold PBS, and incubated with Alexa 488 conjugated secondary antibody (1:400, Cat. #A32731, and #A28175; Invitrogen) or Alexa 594 conjugated secondary antibody (1:400, Cat. #A11012 and #11032; Invitrogen) at 25 °C for 2 h. After staining with DAPI (1:1,000, Cat. #D9542; Sigma-Aldrich) for 5 min, slides were mounted in mounting solution (Cat. #P36930; Invitrogen) and stored at 4 °C in the dark. .. Fluorescence was detected using a confocal laser-scanning microscope (LSM800; Carl Zeiss).

    Incubation:

    Article Title: Jagged1 intracellular domain/SMAD3 complex transcriptionally regulates TWIST1 to drive glioma invasion
    Article Snippet: .. The samples were stained with JAG1 antibody (1:200, Cat. #70109; Cell Signaling Technology) overnight at 4 °C, washed three times for 5 min each in ice-cold PBS, and incubated with Alexa 488 conjugated secondary antibody (1:400, Cat. #A32731, and #A28175; Invitrogen) or Alexa 594 conjugated secondary antibody (1:400, Cat. #A11012 and #11032; Invitrogen) at 25 °C for 2 h. After staining with DAPI (1:1,000, Cat. #D9542; Sigma-Aldrich) for 5 min, slides were mounted in mounting solution (Cat. #P36930; Invitrogen) and stored at 4 °C in the dark. .. Fluorescence was detected using a confocal laser-scanning microscope (LSM800; Carl Zeiss).

    Article Title: Jagged1 intracellular domain/SMAD3 complex transcriptionally regulates TWIST1 to drive glioma invasion.
    Article Snippet: .. The samples were stained with JAG1 antibody (1:200, Cat. #70109; Cell Signaling Technology) overnight at 4 °C, washed three times for 5 min each in ice-cold PBS, and incubated with Alexa 488 conjugated secondary antibody (1:400, Cat. #A32731, and #A28175; Invitrogen) or Alexa 594 conjugated secondary antibody (1:400, Cat. #A11012 and #11032; Invitrogen) at 25 °C for 2 h. After staining with DAPI (1:1,000, Cat. #D9542; Sigma-Aldrich) for 5 min, slides were mounted in mounting solution (Cat. #P36930; Invitrogen) and stored at 4 °C in the dark. .. Fluorescence was detected using a confocal laser-scanning microscope (LSM800; Carl Zeiss).



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    Stepwise differentiation of iPSCs into SGN-enriched organoids and early phenotypic differences in TMPRSS3-deficient clones (A) Schematic overview of the stepwise differentiation protocol. Human iPSCs were expanded in E8 medium, transferred to serum-free (SF) medium, and subsequently directed toward the otic lineage using DFNB medium under feeder-free conditions. (B) Phase-contrast images showing morphological changes during differentiation: adherent iPSC colonies (iPSCs), early aggregates (day 6 and day 9), spherical organoids (day 15), and progressively larger structures (day 25, day 45, and day 70). (C–N) Pluripotency validation of K2/8 WT (C–H) and K2/8 C4 KO (I–N) iPSCs. Nuclear markers NANOG (C, I), OCT4 (D, J), SOX2 (E, K) and surface markers SSEA4 (F, L), TRA-1-60 (G, M), TRA-1-81 (H, N) confirm robust pluripotency of all lines. (O–V) Early otic differentiation at days 3, 6, 9, and 11 in K2/8 WT (O, Q, S, U) and K2/8 C4 KO (P, R, T, V) organoids. (O, P) Day 3: K2/8 WT organoids show diffuse EYA1, ECAD + epithelial boundaries, and DLX5 + cells, whereas K2/8 C4 organoids display perinuclear EYA1, larger ECAD + cells, and no DLX5. (Q, R) Day 6: K2/8 WT retains strong nuclear SOX2 and ECAD; K2/8 C4 shows loss of SOX2 + progenitors and collapsed ECAD expression. (S, T) Day 9: K2/8 WT exhibits nuclear PAX8 + progenitors within organized ECAD + epithelium; K2/8 C4 shows condensed ECAD and reduced PAX8.U, V) Day 11: K2/8 WT expresses not PAX8 and <t>JAG1;</t> K2/8 C4 shows early JAG1 and absent PAX8 expression. Representative images were obtained from n ≥ 3 organoids per time point from four independent differentiation experiments. Scale bars, 20 μm (B: iPSCs, d6, d9, C-N, O′-V′), 100 μm (B: d15, d25, O-V), and 500 μm (B: d45, d70). Nuclei were counterstained with DAPI (blue). See also .
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    Stepwise differentiation of iPSCs into SGN-enriched organoids and early phenotypic differences in TMPRSS3-deficient clones (A) Schematic overview of the stepwise differentiation protocol. Human iPSCs were expanded in E8 medium, transferred to serum-free (SF) medium, and subsequently directed toward the otic lineage using DFNB medium under feeder-free conditions. (B) Phase-contrast images showing morphological changes during differentiation: adherent iPSC colonies (iPSCs), early aggregates (day 6 and day 9), spherical organoids (day 15), and progressively larger structures (day 25, day 45, and day 70). (C–N) Pluripotency validation of K2/8 WT (C–H) and K2/8 C4 KO (I–N) iPSCs. Nuclear markers NANOG (C, I), OCT4 (D, J), SOX2 (E, K) and surface markers SSEA4 (F, L), TRA-1-60 (G, M), TRA-1-81 (H, N) confirm robust pluripotency of all lines. (O–V) Early otic differentiation at days 3, 6, 9, and 11 in K2/8 WT (O, Q, S, U) and K2/8 C4 KO (P, R, T, V) organoids. (O, P) Day 3: K2/8 WT organoids show diffuse EYA1, ECAD + epithelial boundaries, and DLX5 + cells, whereas K2/8 C4 organoids display perinuclear EYA1, larger ECAD + cells, and no DLX5. (Q, R) Day 6: K2/8 WT retains strong nuclear SOX2 and ECAD; K2/8 C4 shows loss of SOX2 + progenitors and collapsed ECAD expression. (S, T) Day 9: K2/8 WT exhibits nuclear PAX8 + progenitors within organized ECAD + epithelium; K2/8 C4 shows condensed ECAD and reduced PAX8.U, V) Day 11: K2/8 WT expresses not PAX8 and <t>JAG1;</t> K2/8 C4 shows early JAG1 and absent PAX8 expression. Representative images were obtained from n ≥ 3 organoids per time point from four independent differentiation experiments. Scale bars, 20 μm (B: iPSCs, d6, d9, C-N, O′-V′), 100 μm (B: d15, d25, O-V), and 500 μm (B: d45, d70). Nuclei were counterstained with DAPI (blue). See also .
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    Stepwise differentiation of iPSCs into SGN-enriched organoids and early phenotypic differences in TMPRSS3-deficient clones (A) Schematic overview of the stepwise differentiation protocol. Human iPSCs were expanded in E8 medium, transferred to serum-free (SF) medium, and subsequently directed toward the otic lineage using DFNB medium under feeder-free conditions. (B) Phase-contrast images showing morphological changes during differentiation: adherent iPSC colonies (iPSCs), early aggregates (day 6 and day 9), spherical organoids (day 15), and progressively larger structures (day 25, day 45, and day 70). (C–N) Pluripotency validation of K2/8 WT (C–H) and K2/8 C4 KO (I–N) iPSCs. Nuclear markers NANOG (C, I), OCT4 (D, J), SOX2 (E, K) and surface markers SSEA4 (F, L), TRA-1-60 (G, M), TRA-1-81 (H, N) confirm robust pluripotency of all lines. (O–V) Early otic differentiation at days 3, 6, 9, and 11 in K2/8 WT (O, Q, S, U) and K2/8 C4 KO (P, R, T, V) organoids. (O, P) Day 3: K2/8 WT organoids show diffuse EYA1, ECAD + epithelial boundaries, and DLX5 + cells, whereas K2/8 C4 organoids display perinuclear EYA1, larger ECAD + cells, and no DLX5. (Q, R) Day 6: K2/8 WT retains strong nuclear SOX2 and ECAD; K2/8 C4 shows loss of SOX2 + progenitors and collapsed ECAD expression. (S, T) Day 9: K2/8 WT exhibits nuclear PAX8 + progenitors within organized ECAD + epithelium; K2/8 C4 shows condensed ECAD and reduced PAX8.U, V) Day 11: K2/8 WT expresses not PAX8 and <t>JAG1;</t> K2/8 C4 shows early JAG1 and absent PAX8 expression. Representative images were obtained from n ≥ 3 organoids per time point from four independent differentiation experiments. Scale bars, 20 μm (B: iPSCs, d6, d9, C-N, O′-V′), 100 μm (B: d15, d25, O-V), and 500 μm (B: d45, d70). Nuclei were counterstained with DAPI (blue). See also .
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    Stepwise differentiation of iPSCs into SGN-enriched organoids and early phenotypic differences in TMPRSS3-deficient clones (A) Schematic overview of the stepwise differentiation protocol. Human iPSCs were expanded in E8 medium, transferred to serum-free (SF) medium, and subsequently directed toward the otic lineage using DFNB medium under feeder-free conditions. (B) Phase-contrast images showing morphological changes during differentiation: adherent iPSC colonies (iPSCs), early aggregates (day 6 and day 9), spherical organoids (day 15), and progressively larger structures (day 25, day 45, and day 70). (C–N) Pluripotency validation of K2/8 WT (C–H) and K2/8 C4 KO (I–N) iPSCs. Nuclear markers NANOG (C, I), OCT4 (D, J), SOX2 (E, K) and surface markers SSEA4 (F, L), TRA-1-60 (G, M), TRA-1-81 (H, N) confirm robust pluripotency of all lines. (O–V) Early otic differentiation at days 3, 6, 9, and 11 in K2/8 WT (O, Q, S, U) and K2/8 C4 KO (P, R, T, V) organoids. (O, P) Day 3: K2/8 WT organoids show diffuse EYA1, ECAD + epithelial boundaries, and DLX5 + cells, whereas K2/8 C4 organoids display perinuclear EYA1, larger ECAD + cells, and no DLX5. (Q, R) Day 6: K2/8 WT retains strong nuclear SOX2 and ECAD; K2/8 C4 shows loss of SOX2 + progenitors and collapsed ECAD expression. (S, T) Day 9: K2/8 WT exhibits nuclear PAX8 + progenitors within organized ECAD + epithelium; K2/8 C4 shows condensed ECAD and reduced PAX8.U, V) Day 11: K2/8 WT expresses not PAX8 and <t>JAG1;</t> K2/8 C4 shows early JAG1 and absent PAX8 expression. Representative images were obtained from n ≥ 3 organoids per time point from four independent differentiation experiments. Scale bars, 20 μm (B: iPSCs, d6, d9, C-N, O′-V′), 100 μm (B: d15, d25, O-V), and 500 μm (B: d45, d70). Nuclei were counterstained with DAPI (blue). See also .
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    a UMAP of single-cell RNA-sequencing from day 10 (pre-treatment), day 12 control, and day 12 PI3K inhibitor (LY294002)-treated kidney organoid nephrons. Cells are colored by sample with marker gene annotations. b Heatmap of Z-scores for hierarchically clustered differentially expressed genes across samples. Representative genes are listed, with a Z-score legend. c Feature plots of genes enriched in each sample group from the differentially expressed gene list. d Feature plots of selected genes for each group based on sample characteristics. For c , d human nephron single-cell detection (Supplementary Fig. ) is shown on the left, organoid plot on the right. e UMAP of single-cell RNA-sequencing from day 12 control and day 12 LY294002-treated kidney organoid nephrons. Cells match a but exclude day 10 sample. Cells are colored by sample with marker gene annotations. f Heatmap of log 2 fold change (log 2 FC) for differentially expressed genes, calculated as the ratio of LY294002-treated to control aggregate expression. Representative genes are listed with a log 2 FC legend. g Feature plots of genes enriched in each sample from the differentially expressed gene list. Human nephron single-cell (Supplementary Fig. ) detection is on the left, organoid plot on the right. h Split violin plots of genes from the differentially expressed gene list. Top two rows show genes enriched in day 12 control cells; bottom two rows show genes enriched in day 12 LY294002-treated cells. Plot colors match sample colors from ( e ). i Gene ontology terms for the top 50 differentially expressed genes per sample. Top graph: day 12 control nephron cells; bottom graph: LY294002-treated nephron cells. j–l Whole-mount immunofluorescent stains of day 12 control and LY294002-treated kidney organoids. Boxed regions are magnified. Inset in j shows absence of detectable HNF4A protein (orange) in day 12 samples. Scale bars: 10 microns. m Whole-mount immunofluorescent stain of day 12 control and LY294002-treated kidney organoids. Insets highlight <t>JAG1</t> and HNF1B protein detection. Scale bars: 500 microns. n Quantification of JAG1 + and HNF1B + nephron size (µm 2 ) and HNF1B + intensity (RFU) for n = 3 day 12 organoids each, across all positive segments. SEM error bars shown. Statistical significance determined by two-sided Student’s t -test.
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    Image Search Results


    Stepwise differentiation of iPSCs into SGN-enriched organoids and early phenotypic differences in TMPRSS3-deficient clones (A) Schematic overview of the stepwise differentiation protocol. Human iPSCs were expanded in E8 medium, transferred to serum-free (SF) medium, and subsequently directed toward the otic lineage using DFNB medium under feeder-free conditions. (B) Phase-contrast images showing morphological changes during differentiation: adherent iPSC colonies (iPSCs), early aggregates (day 6 and day 9), spherical organoids (day 15), and progressively larger structures (day 25, day 45, and day 70). (C–N) Pluripotency validation of K2/8 WT (C–H) and K2/8 C4 KO (I–N) iPSCs. Nuclear markers NANOG (C, I), OCT4 (D, J), SOX2 (E, K) and surface markers SSEA4 (F, L), TRA-1-60 (G, M), TRA-1-81 (H, N) confirm robust pluripotency of all lines. (O–V) Early otic differentiation at days 3, 6, 9, and 11 in K2/8 WT (O, Q, S, U) and K2/8 C4 KO (P, R, T, V) organoids. (O, P) Day 3: K2/8 WT organoids show diffuse EYA1, ECAD + epithelial boundaries, and DLX5 + cells, whereas K2/8 C4 organoids display perinuclear EYA1, larger ECAD + cells, and no DLX5. (Q, R) Day 6: K2/8 WT retains strong nuclear SOX2 and ECAD; K2/8 C4 shows loss of SOX2 + progenitors and collapsed ECAD expression. (S, T) Day 9: K2/8 WT exhibits nuclear PAX8 + progenitors within organized ECAD + epithelium; K2/8 C4 shows condensed ECAD and reduced PAX8.U, V) Day 11: K2/8 WT expresses not PAX8 and JAG1; K2/8 C4 shows early JAG1 and absent PAX8 expression. Representative images were obtained from n ≥ 3 organoids per time point from four independent differentiation experiments. Scale bars, 20 μm (B: iPSCs, d6, d9, C-N, O′-V′), 100 μm (B: d15, d25, O-V), and 500 μm (B: d45, d70). Nuclei were counterstained with DAPI (blue). See also .

    Journal: iScience

    Article Title: Otic organoids: A model to study spiral ganglion neuron characteristics in Tmprss3-deficiency

    doi: 10.1016/j.isci.2025.114355

    Figure Lengend Snippet: Stepwise differentiation of iPSCs into SGN-enriched organoids and early phenotypic differences in TMPRSS3-deficient clones (A) Schematic overview of the stepwise differentiation protocol. Human iPSCs were expanded in E8 medium, transferred to serum-free (SF) medium, and subsequently directed toward the otic lineage using DFNB medium under feeder-free conditions. (B) Phase-contrast images showing morphological changes during differentiation: adherent iPSC colonies (iPSCs), early aggregates (day 6 and day 9), spherical organoids (day 15), and progressively larger structures (day 25, day 45, and day 70). (C–N) Pluripotency validation of K2/8 WT (C–H) and K2/8 C4 KO (I–N) iPSCs. Nuclear markers NANOG (C, I), OCT4 (D, J), SOX2 (E, K) and surface markers SSEA4 (F, L), TRA-1-60 (G, M), TRA-1-81 (H, N) confirm robust pluripotency of all lines. (O–V) Early otic differentiation at days 3, 6, 9, and 11 in K2/8 WT (O, Q, S, U) and K2/8 C4 KO (P, R, T, V) organoids. (O, P) Day 3: K2/8 WT organoids show diffuse EYA1, ECAD + epithelial boundaries, and DLX5 + cells, whereas K2/8 C4 organoids display perinuclear EYA1, larger ECAD + cells, and no DLX5. (Q, R) Day 6: K2/8 WT retains strong nuclear SOX2 and ECAD; K2/8 C4 shows loss of SOX2 + progenitors and collapsed ECAD expression. (S, T) Day 9: K2/8 WT exhibits nuclear PAX8 + progenitors within organized ECAD + epithelium; K2/8 C4 shows condensed ECAD and reduced PAX8.U, V) Day 11: K2/8 WT expresses not PAX8 and JAG1; K2/8 C4 shows early JAG1 and absent PAX8 expression. Representative images were obtained from n ≥ 3 organoids per time point from four independent differentiation experiments. Scale bars, 20 μm (B: iPSCs, d6, d9, C-N, O′-V′), 100 μm (B: d15, d25, O-V), and 500 μm (B: d45, d70). Nuclei were counterstained with DAPI (blue). See also .

    Article Snippet: JAG1 , Santa Cruz , Sc-390177.

    Techniques: Clone Assay, Biomarker Discovery, Expressing

    Otic patterning and neuronal differentiation in WT and TMPRSS3-deficient organoids (A) Day 16 K2/8 WT organoid showing compartmentalization into ECAD + otocyst-like epithelium (red) and JAG1 + protruding domain (green). Schematic illustration (center) indicates spatial organization. (B, D) Day 25 K2/8 WT organoids expressing PAX8 and JAG1, together with SOX2 + progenitors and POU4F1 + neuronal precursors. (C, E) Day 25 K2/8 C4 KO organoids also expressed PAX8 and JAG1, but lacked SOX2 and POU4F1, indicating absence of progenitors and early neuronal specification. (F, G) Day 45 WT organoids display MAP2 + neurites co-expressing PRH (F) or POU4F1 (G). PRH is typically associated with type II SGNs, while POU4F1 marks type I SGNs, indicating the emergence of both major SGN subtypes at this stage. (H, H′) Day 70 WT organoids showing TMPRSS3 expression (red) co-localizing with PRH (green) in neuronal cell bodies. Higher magnification (H′) highlights TMPRSS3 + /PRH + neurons. Representative images were obtained from n ≥ 3 organoids per time point from four independent differentiation experiments. Scale bars, 100 μm (A–H) and 10 μm (H′). Nuclei were counterstained with DAPI (blue). See also .

    Journal: iScience

    Article Title: Otic organoids: A model to study spiral ganglion neuron characteristics in Tmprss3-deficiency

    doi: 10.1016/j.isci.2025.114355

    Figure Lengend Snippet: Otic patterning and neuronal differentiation in WT and TMPRSS3-deficient organoids (A) Day 16 K2/8 WT organoid showing compartmentalization into ECAD + otocyst-like epithelium (red) and JAG1 + protruding domain (green). Schematic illustration (center) indicates spatial organization. (B, D) Day 25 K2/8 WT organoids expressing PAX8 and JAG1, together with SOX2 + progenitors and POU4F1 + neuronal precursors. (C, E) Day 25 K2/8 C4 KO organoids also expressed PAX8 and JAG1, but lacked SOX2 and POU4F1, indicating absence of progenitors and early neuronal specification. (F, G) Day 45 WT organoids display MAP2 + neurites co-expressing PRH (F) or POU4F1 (G). PRH is typically associated with type II SGNs, while POU4F1 marks type I SGNs, indicating the emergence of both major SGN subtypes at this stage. (H, H′) Day 70 WT organoids showing TMPRSS3 expression (red) co-localizing with PRH (green) in neuronal cell bodies. Higher magnification (H′) highlights TMPRSS3 + /PRH + neurons. Representative images were obtained from n ≥ 3 organoids per time point from four independent differentiation experiments. Scale bars, 100 μm (A–H) and 10 μm (H′). Nuclei were counterstained with DAPI (blue). See also .

    Article Snippet: JAG1 , Santa Cruz , Sc-390177.

    Techniques: Expressing

    a UMAP of single-cell RNA-sequencing from day 10 (pre-treatment), day 12 control, and day 12 PI3K inhibitor (LY294002)-treated kidney organoid nephrons. Cells are colored by sample with marker gene annotations. b Heatmap of Z-scores for hierarchically clustered differentially expressed genes across samples. Representative genes are listed, with a Z-score legend. c Feature plots of genes enriched in each sample group from the differentially expressed gene list. d Feature plots of selected genes for each group based on sample characteristics. For c , d human nephron single-cell detection (Supplementary Fig. ) is shown on the left, organoid plot on the right. e UMAP of single-cell RNA-sequencing from day 12 control and day 12 LY294002-treated kidney organoid nephrons. Cells match a but exclude day 10 sample. Cells are colored by sample with marker gene annotations. f Heatmap of log 2 fold change (log 2 FC) for differentially expressed genes, calculated as the ratio of LY294002-treated to control aggregate expression. Representative genes are listed with a log 2 FC legend. g Feature plots of genes enriched in each sample from the differentially expressed gene list. Human nephron single-cell (Supplementary Fig. ) detection is on the left, organoid plot on the right. h Split violin plots of genes from the differentially expressed gene list. Top two rows show genes enriched in day 12 control cells; bottom two rows show genes enriched in day 12 LY294002-treated cells. Plot colors match sample colors from ( e ). i Gene ontology terms for the top 50 differentially expressed genes per sample. Top graph: day 12 control nephron cells; bottom graph: LY294002-treated nephron cells. j–l Whole-mount immunofluorescent stains of day 12 control and LY294002-treated kidney organoids. Boxed regions are magnified. Inset in j shows absence of detectable HNF4A protein (orange) in day 12 samples. Scale bars: 10 microns. m Whole-mount immunofluorescent stain of day 12 control and LY294002-treated kidney organoids. Insets highlight JAG1 and HNF1B protein detection. Scale bars: 500 microns. n Quantification of JAG1 + and HNF1B + nephron size (µm 2 ) and HNF1B + intensity (RFU) for n = 3 day 12 organoids each, across all positive segments. SEM error bars shown. Statistical significance determined by two-sided Student’s t -test.

    Journal: Nature Communications

    Article Title: Controlling nephron precursor differentiation to generate proximal-biased kidney organoids with emerging maturity

    doi: 10.1038/s41467-025-63107-9

    Figure Lengend Snippet: a UMAP of single-cell RNA-sequencing from day 10 (pre-treatment), day 12 control, and day 12 PI3K inhibitor (LY294002)-treated kidney organoid nephrons. Cells are colored by sample with marker gene annotations. b Heatmap of Z-scores for hierarchically clustered differentially expressed genes across samples. Representative genes are listed, with a Z-score legend. c Feature plots of genes enriched in each sample group from the differentially expressed gene list. d Feature plots of selected genes for each group based on sample characteristics. For c , d human nephron single-cell detection (Supplementary Fig. ) is shown on the left, organoid plot on the right. e UMAP of single-cell RNA-sequencing from day 12 control and day 12 LY294002-treated kidney organoid nephrons. Cells match a but exclude day 10 sample. Cells are colored by sample with marker gene annotations. f Heatmap of log 2 fold change (log 2 FC) for differentially expressed genes, calculated as the ratio of LY294002-treated to control aggregate expression. Representative genes are listed with a log 2 FC legend. g Feature plots of genes enriched in each sample from the differentially expressed gene list. Human nephron single-cell (Supplementary Fig. ) detection is on the left, organoid plot on the right. h Split violin plots of genes from the differentially expressed gene list. Top two rows show genes enriched in day 12 control cells; bottom two rows show genes enriched in day 12 LY294002-treated cells. Plot colors match sample colors from ( e ). i Gene ontology terms for the top 50 differentially expressed genes per sample. Top graph: day 12 control nephron cells; bottom graph: LY294002-treated nephron cells. j–l Whole-mount immunofluorescent stains of day 12 control and LY294002-treated kidney organoids. Boxed regions are magnified. Inset in j shows absence of detectable HNF4A protein (orange) in day 12 samples. Scale bars: 10 microns. m Whole-mount immunofluorescent stain of day 12 control and LY294002-treated kidney organoids. Insets highlight JAG1 and HNF1B protein detection. Scale bars: 500 microns. n Quantification of JAG1 + and HNF1B + nephron size (µm 2 ) and HNF1B + intensity (RFU) for n = 3 day 12 organoids each, across all positive segments. SEM error bars shown. Statistical significance determined by two-sided Student’s t -test.

    Article Snippet: Primary antibodies used in this study were: WT1 (abcam, ab89901, 1:1000), JAG1 (R&D Systems, AF599, 1:300), HNF1B (Thermo Fisher Scientific, MA5-24605, 1:500), HNF4A (R&D Systems, MAB4605, 1:200), CDH1 (BD Biosciences, 610181, 1:300), ZO-1 (Thermo Fisher Scientific, 33-9100, 1:200), PAX2 (R&D Systems, AF3364, 1:50), SIX1 (Cell Signaling Technology, 12891S, 1:300), HES1 (Cell Signaling Technology, 11988, 1:300), POU3F3 (Novus Biologicals, NBP1-49872, 1:500), HNF4G (Thermo Fisher Scientific, PA5-82189, 1:200), LRP2 (My Bio Source, MBS690201, 1:500), HAVCR1 (R&D Systems, AF1750, 1:200), γH2AX (Cell Signaling Technology, 2577), LAMB1 (Santa Cruz Biotechnology, sc-33709, 1:250), ATP1A1 (Abcam, ab7671, 1:200), SOX9 (Abcam, ab185230, 1:300), PODXL (R&D Systems, AF1658, 1:200), PAX8 (Abcam, ab189249, 1:100), LEF1 (Santa Cruz Biotechnology, sc-374412, 1:200), LTL (Vector Laboratories, B-1325-2, 1:300), SLC12A1 (Sigma Aldrich, HPA018107, 1:200), TFAP2A (Santa Cruz Biotechnology, sc-12726, 1:200), Alexa 647-conjugated LRP2 (R&D Systems, FAB9578R, 1:100), and Alexa 594-conjugated LRP2 (R&D Systems, FAB9578T, 1:100).

    Techniques: RNA Sequencing, Control, Marker, Expressing, Staining